not much, just changed tabs to spaces

1 files changed, 197 insertions, 197 deletions

diff --git a/mutator.sh b/mutator.sh
index 1797cc5..ed67f00 100755
--- a/mutator.sh
+++ b/mutator.sh
@@ -15,217 +15,217 @@ PRINT_PRETTY=false
 
 while [[ $# -gt 0 ]]
 do
-	passarg="$1"
-	case $passarg in
-		-c|--command)
-		COMMAND="$2"
-		shift
-		;;
-		-h|--help|-help)
-		echo "-h, 	--help prints out the help.Obviously..."
-		echo "-f,	--file tells mutator to run the commands from the file."
-		echo "-c, 	--command you can specify the command you want to pass to mutator."
-		echo "			clean runs make clean."
-		echo "			build-all runs make all."
-		echo "			run runs the mutator executable on the target."
-		echo "			default runs build-all and then run."
-		echo "			format calls clang-format to format the mutant. later to be used for the test command."
-		echo "			test runs the tests on the executables and checks the results."
-		echo "			misrac checks for misrac rules"
-		echo "			auto-refac runs the automatic-refactoring on the inputs. auto-refac will run "
-		echo "-v, 	--version prints out the version."
-		echo "-i, 	--input, -input lets you choose the input file(or white-space-separated list of files) that is going to be passed to the mutator executable(s)."
-		echo "-o, 	--output, -output lets you choose where to put the mutant."
-		echo "-pp,	--print-pretty, prints the output in a pretty format in a new file. The new file has the same name with a \"-pretty\" added to the name in the same directory."
-		echo "-t,	--test, runs the tests on the built executables. It should be followed by an executable name and the test to run on it. The accepted options are: tdd,valgrind,xsd,precommit."
-		echo "	For example: ./mutator.sh --test mutator-lvl0 valgrind"
-		echo "-opts 	--options, pass options to the executable(s). The executables support all the clang options. Please enclose all the options in double quatation."
-		echo "	For example: -opts \"-Wall std=c89\""
-		echo "-copts 	--customoptions, same as opts, but only used for custom options defined for the executable. For example: -copts \"-SysHeader=false -MainOnly=true\""
-		echo ""
-		echo "For a list of available options for each executable run them with -help to see a list."
-		exit 0
-		;;
-		-pp|--print-pretty)
-		PRINT_PRETTY=true
-		;;
-		-t|--test)
-		if [[ "$2" == mutator-lvl0 && "$3" == valgrind ]]; then
-			echo "Running command:"
-			echo "valgrind ./"$2" -SysHeader=false -MainOnly=true  ./test/testFuncs1.c ./test/testFuncs2.c ./test/testFuncs3.c -- -std=c90 -I/lib/gcc/x86_64-redhat-linux/6.3.1/include > ./test/misra-log"
-			"valgrind" ./"$2" -SysHeader=false -MainOnly=true  ./test/testFuncs1.c ./test/testFuncs2.c ./test/testFuncs3.c -- -std=c90 -I/lib/gcc/x86_64-redhat-linux/6.3.1/include > ./test/misra-log
-		elif [[ "$2" == mutator-lvl0 && "$3" == tdd ]]; then
-			echo "Running command:"
-			echo "./mutator-lvl0 -SysHeader=false -MainOnly=true  ./test/testFuncs1.c ./test/testFuncs2.c ./test/testFuncs3.c -- -std=c90 -I/lib/gcc/x86_64-redhat-linux/6.3.1/include > ./test/misra-log"
-			"./mutator-lvl0" -SysHeader=false -MainOnly=true  ./test/testFuncs1.c ./test/testFuncs2.c ./test/testFuncs3.c -- -std=c90 -I/lib/gcc/x86_64-redhat-linux/6.3.1/include > ./test/misra-log
-		elif [[ "$2" == mutator-lvl0 && "$3" == xsd ]]; then
-			echo "xmllint --noout --schema ./samples/mutator0-report-schema.xsd ./test/misrareport.xml"
-			"xmllint" --noout --schema ./samples/mutator0-report-schema.xsd ./test/misrareport.xml
+  passarg="$1"
+  case $passarg in
+    -c|--command)
+    COMMAND="$2"
+    shift
+    ;;
+    -h|--help|-help)
+    echo "-h,   --help prints out the help.Obviously..."
+    echo "-f, --file tells mutator to run the commands from the file."
+    echo "-c,   --command you can specify the command you want to pass to mutator."
+    echo "      clean runs make clean."
+    echo "      build-all runs make all."
+    echo "      run runs the mutator executable on the target."
+    echo "      default runs build-all and then run."
+    echo "      format calls clang-format to format the mutant. later to be used for the test command."
+    echo "      test runs the tests on the executables and checks the results."
+    echo "      misrac checks for misrac rules"
+    echo "      auto-refac runs the automatic-refactoring on the inputs. auto-refac will run "
+    echo "-v,   --version prints out the version."
+    echo "-i,   --input, -input lets you choose the input file(or white-space-separated list of files) that is going to be passed to the mutator executable(s)."
+    echo "-o,   --output, -output lets you choose where to put the mutant."
+    echo "-pp,  --print-pretty, prints the output in a pretty format in a new file. The new file has the same name with a \"-pretty\" added to the name in the same directory."
+    echo "-t, --test, runs the tests on the built executables. It should be followed by an executable name and the test to run on it. The accepted options are: tdd,valgrind,xsd,precommit."
+    echo "  For example: ./mutator.sh --test mutator-lvl0 valgrind"
+    echo "-opts   --options, pass options to the executable(s). The executables support all the clang options. Please enclose all the options in double quatation."
+    echo "  For example: -opts \"-Wall std=c89\""
+    echo "-copts  --customoptions, same as opts, but only used for custom options defined for the executable. For example: -copts \"-SysHeader=false -MainOnly=true\""
+    echo ""
+    echo "For a list of available options for each executable run them with -help to see a list."
+    exit 0
+    ;;
+    -pp|--print-pretty)
+    PRINT_PRETTY=true
+    ;;
+    -t|--test)
+    if [[ "$2" == mutator-lvl0 && "$3" == valgrind ]]; then
+      echo "Running command:"
+      echo "valgrind ./"$2" -SysHeader=false -MainOnly=true  ./test/testFuncs1.c ./test/testFuncs2.c ./test/testFuncs3.c -- -std=c90 -I/lib/gcc/x86_64-redhat-linux/6.3.1/include > ./test/misra-log"
+      "valgrind" ./"$2" -SysHeader=false -MainOnly=true  ./test/testFuncs1.c ./test/testFuncs2.c ./test/testFuncs3.c -- -std=c90 -I/lib/gcc/x86_64-redhat-linux/6.3.1/include > ./test/misra-log
+    elif [[ "$2" == mutator-lvl0 && "$3" == tdd ]]; then
+      echo "Running command:"
+      echo "./mutator-lvl0 -SysHeader=false -MainOnly=true  ./test/testFuncs1.c ./test/testFuncs2.c ./test/testFuncs3.c -- -std=c90 -I/lib/gcc/x86_64-redhat-linux/6.3.1/include > ./test/misra-log"
+      "./mutator-lvl0" -SysHeader=false -MainOnly=true  ./test/testFuncs1.c ./test/testFuncs2.c ./test/testFuncs3.c -- -std=c90 -I/lib/gcc/x86_64-redhat-linux/6.3.1/include > ./test/misra-log
+    elif [[ "$2" == mutator-lvl0 && "$3" == xsd ]]; then
+      echo "xmllint --noout --schema ./samples/mutator0-report-schema.xsd ./test/misrareport.xml"
+      "xmllint" --noout --schema ./samples/mutator0-report-schema.xsd ./test/misrareport.xml
     elif [[ "$2" == precommit ]]; then
       cd ./extra-tools
       "./precommitTests.sh"
-		else
-			echo "unknown combination of options: $2 and $3"
-			exit 127
-		fi
-		exit 0
-		;;
-		-f|--file)
-		INPUT_FILE="$2"
-		while read -r line
-		do
-			case $line in 
-				action_name:*)
-				F_ACTION_NAME=${line:12:$((${#line}))}
-				;;
-				executable_name:*)
-				F_EXEC_NAME=${line:16:$((${#line}))}
-				;;
-				exec_opts:*)
-				F_EXEC_COPTS=${line:10:$((${#line}))}
-				;;
-				in_files:*)
-				F_IN_FILES=${line:9:$((${#line}))}
-				;;
-				libtooling_options:*)
-				F_LIBTOOLING_OPTS=${line:19:$((${#line}))}
-				;;
-				out_files:*)
-				F_OUT_FILE=${line:10:$((${#line}))}
-				;;
-				log_files:*)
-				F_LOG_FILE=${line:10:$((${#line}))}
-				;;
-				\#*)
-				#ignore.its a comment.
-				;;
-				print_pretty:*)
-				F_PRINT_PRETTY=${line:13:$((${#line}))}
-				;;
-				end_action:*)
-				F_END_ACTION=${line:11:$((${#line}))}
-				if [[ "$F_END_ACTION" == run ]]; then
-					echo "running $F_ACTION_NAME ..."
-					echo "running ./$F_EXEC_NAME $F_EXEC_COPTS $F_IN_FILES -- $F_LIBTOOLING_OPTS > $F_OUT_FILE for $F_ACTION_NAME"
+    else
+      echo "unknown combination of options: $2 and $3"
+      exit 127
+    fi
+    exit 0
+    ;;
+    -f|--file)
+    INPUT_FILE="$2"
+    while read -r line
+    do
+      case $line in 
+        action_name:*)
+        F_ACTION_NAME=${line:12:$((${#line}))}
+        ;;
+        executable_name:*)
+        F_EXEC_NAME=${line:16:$((${#line}))}
+        ;;
+        exec_opts:*)
+        F_EXEC_COPTS=${line:10:$((${#line}))}
+        ;;
+        in_files:*)
+        F_IN_FILES=${line:9:$((${#line}))}
+        ;;
+        libtooling_options:*)
+        F_LIBTOOLING_OPTS=${line:19:$((${#line}))}
+        ;;
+        out_files:*)
+        F_OUT_FILE=${line:10:$((${#line}))}
+        ;;
+        log_files:*)
+        F_LOG_FILE=${line:10:$((${#line}))}
+        ;;
+        \#*)
+        #ignore.its a comment.
+        ;;
+        print_pretty:*)
+        F_PRINT_PRETTY=${line:13:$((${#line}))}
+        ;;
+        end_action:*)
+        F_END_ACTION=${line:11:$((${#line}))}
+        if [[ "$F_END_ACTION" == run ]]; then
+          echo "running $F_ACTION_NAME ..."
+          echo "running ./$F_EXEC_NAME $F_EXEC_COPTS $F_IN_FILES -- $F_LIBTOOLING_OPTS > $F_OUT_FILE for $F_ACTION_NAME"
           eval "./"$F_EXEC_NAME $F_EXEC_COPTS $F_IN_FILES -- $F_LIBTOOLING_OPTS > $F_OUT_FILE
-					if [[ "$F_PRINT_PRETTY" = true ]]; then
-						echo "running pretty print..."
-						source ./extra-tools/ReportPrintPretty.sh $F_OUT_FILE $F_OUT_FILE-pretty
-					fi
-				elif [[ "$F_END_ACTION" == stop ]]; then
-					#skip running ths action
-					echo "skipping $F_ACTION_NAME ..."
-				else
-					echo "unknown option $F_END_ACTION for end_action. currently the only acceptable options are \"run\" and \"stop\"."
-				fi
-				;;
-			esac
-		done < "$INPUT_FILE"
-		exit 0
-		shift
-		;;
-		-v|--version)
-		echo "mutator-lvl0 1.0.0 Pre-release"
-		echo "mutator 1.0.0. Demo"
-		exit 0
-		;;
-		-i|--input|-input)
-		while [[ ! "$2" == -* ]] && [[ $# -gt 0 ]]; do
-			INPUT="$INPUT"" ""$2"
-			shift
-		done
-		;;
-		-opts|--options)
-		OPTIONS="$2"
-		shift
-		;;
-		-copts|--customoptions)
-		COPTIONS="$2"
-		shift
-		;;
-		-o|--output|-output)
-		OUTPUT="$2"
-		shift
-		;;
-		*)
-		#not a valid argument
-		echo  "$1 is not a valid argument..."
-		exit 127
-		;;
-	esac
-	shift
+          if [[ "$F_PRINT_PRETTY" = true ]]; then
+            echo "running pretty print..."
+            source ./extra-tools/ReportPrintPretty.sh $F_OUT_FILE $F_OUT_FILE-pretty
+          fi
+        elif [[ "$F_END_ACTION" == stop ]]; then
+          #skip running ths action
+          echo "skipping $F_ACTION_NAME ..."
+        else
+          echo "unknown option $F_END_ACTION for end_action. currently the only acceptable options are \"run\" and \"stop\"."
+        fi
+        ;;
+      esac
+    done < "$INPUT_FILE"
+    exit 0
+    shift
+    ;;
+    -v|--version)
+    echo "mutator-lvl0 1.0.0 Pre-release"
+    echo "mutator 1.0.0. Demo"
+    exit 0
+    ;;
+    -i|--input|-input)
+    while [[ ! "$2" == -* ]] && [[ $# -gt 0 ]]; do
+      INPUT="$INPUT"" ""$2"
+      shift
+    done
+    ;;
+    -opts|--options)
+    OPTIONS="$2"
+    shift
+    ;;
+    -copts|--customoptions)
+    COPTIONS="$2"
+    shift
+    ;;
+    -o|--output|-output)
+    OUTPUT="$2"
+    shift
+    ;;
+    *)
+    #not a valid argument
+    echo  "$1 is not a valid argument..."
+    exit 127
+    ;;
+  esac
+  shift
 done
 
 if [[ "$COMMAND" == "clean" ]]; then
-	echo "Running make clean..."
-	echo "Killing all mutants..."
-	"make" clean
-	rm ./test/"$OUTPUT"
-	rm ./test/misra-log
-	rm ./test/medium.c
-	rm ./test/mutant_format.c
-	rm ./test/mutant-lvl1.c
-	rm ./extra-tools/dump
+  echo "Running make clean..."
+  echo "Killing all mutants..."
+  "make" clean
+  rm ./test/"$OUTPUT"
+  rm ./test/misra-log
+  rm ./test/medium.c
+  rm ./test/mutant_format.c
+  rm ./test/mutant-lvl1.c
+  rm ./extra-tools/dump
 elif [[ "$COMMAND" == "format" ]]; then
-	echo 'using clang-format to format the mutant...'
-	"/home/bloodstalker/llvm-clang/build/bin/clang-format"	$OUTPUT > $OUTPUT_FORMAT
+  echo 'using clang-format to format the mutant...'
+  "/home/bloodstalker/llvm-clang/build/bin/clang-format"  $OUTPUT > $OUTPUT_FORMAT
 elif [[ "$COMMAND" == "test" ]]; then
-	echo "you haven't implemented it yet..."
+  echo "you haven't implemented it yet..."
 elif [[ "$COMMAND" == "build-all" ]]; then
-	echo "Building all executables..."
-	"make" all
+  echo "Building all executables..."
+  "make" all
 elif [[ "$COMMAND" == "run" ]];then
-	echo "Running executables on target file..."
-	"./mutator-lvl1" $INPUT -- > mutant-lvl1.c
-	"./mutator-lvl2" mutant-lvl1.c -- > $OUTPUT
+  echo "Running executables on target file..."
+  "./mutator-lvl1" $INPUT -- > mutant-lvl1.c
+  "./mutator-lvl2" mutant-lvl1.c -- > $OUTPUT
 elif [[ "$COMMAND" == "misrac" ]]; then
-	echo "Removing previous XML report..."
-	"rm" ./test/misrareport.xml
-	echo "Removing previous JSON report..."
-	"rm" ./test/misrareport.json
-	echo "checking input file(s) against Misra-C 2004..."
-	echo "Command to run:"
-	echo "./mutator-lvl0 ${COPTIONS:0:$((${#COPTIONS}))} $INPUT -- ${OPTIONS:0:$((${#OPTIONS}))} > ./test/misra-log"
-	"./mutator-lvl0" ${COPTIONS:0:$((${#COPTIONS}))} $INPUT -- ${OPTIONS:0:$((${#OPTIONS}))} > ./test/misra-log
-	if [[ "$PRINT_PRETTY" = true ]]; then
-		echo "running pretty print..."
-		source ./extra-tools/ReportPrintPretty.sh ./test/misra-log ./test/misra-log-pretty
-	fi
+  echo "Removing previous XML report..."
+  "rm" ./test/misrareport.xml
+  echo "Removing previous JSON report..."
+  "rm" ./test/misrareport.json
+  echo "checking input file(s) against Misra-C 2004..."
+  echo "Command to run:"
+  echo "./mutator-lvl0 ${COPTIONS:0:$((${#COPTIONS}))} $INPUT -- ${OPTIONS:0:$((${#OPTIONS}))} > ./test/misra-log"
+  "./mutator-lvl0" ${COPTIONS:0:$((${#COPTIONS}))} $INPUT -- ${OPTIONS:0:$((${#OPTIONS}))} > ./test/misra-log
+  if [[ "$PRINT_PRETTY" = true ]]; then
+    echo "running pretty print..."
+    source ./extra-tools/ReportPrintPretty.sh ./test/misra-log ./test/misra-log-pretty
+  fi
 elif [[ "$COMMAND" == "default" ]]; then
-	echo "This option is deprecated..."
-	exit 0
-	echo "Building all target executables..."
-	"make" all CXX=clang++ BUILD_MODE=COV_NO_CLANG_1Z
-	echo "Ruunning the input through clang-format..."
-	"clang-format"	$INPUT -- > ./test/$OUTPUT_FORMAT
-	"cp" ./test/$OUTPUT_FORMAT ./test/medium.c
-	echo "Running all exetubales on target input..."
-	echo "Level 1..."
-	"./mutator-lvl1" ./test/medium.c -- > ./test/mutant-lvl1.c
-	echo "Level 2..."
-	"./mutator-lvl2" ./test/mutant-lvl1.c -- > ./test/$OUTPUT
-	echo "Using clang-format to format the mutant..."
-	"clang-format"	./test/$OUTPUT -- > ./test/$OUTPUT_FORMAT
+  echo "This option is deprecated..."
+  exit 0
+  echo "Building all target executables..."
+  "make" all CXX=clang++ BUILD_MODE=COV_NO_CLANG_1Z
+  echo "Ruunning the input through clang-format..."
+  "clang-format"  $INPUT -- > ./test/$OUTPUT_FORMAT
+  "cp" ./test/$OUTPUT_FORMAT ./test/medium.c
+  echo "Running all exetubales on target input..."
+  echo "Level 1..."
+  "./mutator-lvl1" ./test/medium.c -- > ./test/mutant-lvl1.c
+  echo "Level 2..."
+  "./mutator-lvl2" ./test/mutant-lvl1.c -- > ./test/$OUTPUT
+  echo "Using clang-format to format the mutant..."
+  "clang-format"  ./test/$OUTPUT -- > ./test/$OUTPUT_FORMAT
 elif [[ "$COMMAND" == "auto-refac" ]]; then
-	echo "Warning! This option is not yet completely implemented."
-	echo "Copying input file(s) to temp..."
-	CP_INPUT_ARR=$(echo "$INPUT" | awk 'BEGIN{RS=" "}{print $1}')
-	echo $CP_INPUT_ARR
-	"cp" $CP_INPUT_ARR ./temp
-	echo "Running clang-format on the copies of input(s)..."
-	RUN_INPUT_ARR=$(ls ./temp | gawk 'BEGIN{RS="\n"}{print $1}')
-	for loopinput in ${RUN_INPUT_ARR[@]}; do
-		echo mut1-$loopinput
-		echo "Running automatic-refactoring on input mut1-$loopinput..."
-		"./mutator-lvl1" ./temp/$loopinput -- -w > ./temp/mut1-$loopinput
-		"clang-format" -i $loopinput
-		"./mutator-lvl2" ./temp/mut1-$loopinput -- -w > ./temp/mut2-$loopinput
-		"clang-format" -i ./temp/mut2-$loopinput
-	done
+  echo "Warning! This option is not yet completely implemented."
+  echo "Copying input file(s) to temp..."
+  CP_INPUT_ARR=$(echo "$INPUT" | awk 'BEGIN{RS=" "}{print $1}')
+  echo $CP_INPUT_ARR
+  "cp" $CP_INPUT_ARR ./temp
+  echo "Running clang-format on the copies of input(s)..."
+  RUN_INPUT_ARR=$(ls ./temp | gawk 'BEGIN{RS="\n"}{print $1}')
+  for loopinput in ${RUN_INPUT_ARR[@]}; do
+    echo mut1-$loopinput
+    echo "Running automatic-refactoring on input mut1-$loopinput..."
+    "./mutator-lvl1" ./temp/$loopinput -- -w > ./temp/mut1-$loopinput
+    "clang-format" -i $loopinput
+    "./mutator-lvl2" ./temp/mut1-$loopinput -- -w > ./temp/mut2-$loopinput
+    "clang-format" -i ./temp/mut2-$loopinput
+  done
 elif [[ "$COMMAND" == "jack" ]]; then
-	echo
+  echo
 else 
-	echo "$COMMAND is not a valid command..."
-	echo "Use --help for a list of valid commands..."
-	exit 1
+  echo "$COMMAND is not a valid command..."
+  echo "Use --help for a list of valid commands..."
+  exit 1
 fi