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#!/bin/bash
#the UI for mutator. it's supposed to mimic the normal 'nix argument passing.
#the arguments' positions are not important. you also get long and short options.
#default args
#INPUT="./test/testFuncs1.c ./test/testFuncs2.c"
OUTPUT="./mutant.c"
OUTPUT_FORMAT="./mutant_format.c"
COMMAND="jack"
OPTIONS=""
COPTIONS=""
INPUT_FILE=""
PRINT_PRETTY=false
while [[ $# -gt 0 ]]
do
passarg="$1"
case $passarg in
-c|--command)
COMMAND="$2"
shift
;;
-h|--help|-help)
echo "-h, --help prints out the help.Obviously..."
echo "-f, --file tells mutator to run the commands from the file."
echo "-c, --command you can specify the command you want to pass to mutator."
echo " clean runs make clean."
echo " build-all runs make all."
echo " run runs the mutator executable on the target."
echo " default runs build-all and then run."
echo " format calls clang-format to format the mutant. later to be used for the test command."
echo " test runs the tests on the executables and checks the results."
echo " misrac checks for misrac rules"
echo " auto-refac runs the automatic-refactoring on the inputs. auto-refac will run "
echo "-v, --version prints out the version."
echo "-i, --input, -input lets you choose the input file(or white-space-separated list of files) that is going to be passed to the mutator executable(s)."
echo "-o, --output, -output lets you choose where to put the mutant."
echo "-pp, --print-pretty, prints the output in a pretty format in a new file. The new file has the same name with a \"-pretty\" added to the name in the same directory."
echo "-t, --test, runs the tests on the built executables. It should be followed by an executable name and the test to run on it. The accepted options are: tdd,valgrind,xsd,precommit."
echo " For example: ./mutator.sh --test mutator-lvl0 valgrind"
echo "-opts --options, pass options to the executable(s). The executables support all the clang options. Please enclose all the options in double quatation."
echo " For example: -opts \"-Wall std=c89\""
echo "-copts --customoptions, same as opts, but only used for custom options defined for the executable. For example: -copts \"-SysHeader=false -MainOnly=true\""
echo ""
echo "For a list of available options for each executable run them with -help to see a list."
exit 0
;;
-pp|--print-pretty)
PRINT_PRETTY=true
;;
-t|--test)
if [[ "$2" == mutator-lvl0 && "$3" == valgrind ]]; then
echo "Running command:"
echo "valgrind ./"$2" -SysHeader=false -MainOnly=true ./test/testFuncs1.c ./test/testFuncs2.c ./test/testFuncs3.c -- -std=c90 -I/lib/gcc/x86_64-redhat-linux/6.3.1/include > ./test/misra-log"
"valgrind" ./"$2" -SysHeader=false -MainOnly=true ./test/testFuncs1.c ./test/testFuncs2.c ./test/testFuncs3.c -- -std=c90 -I/lib/gcc/x86_64-redhat-linux/6.3.1/include > ./test/misra-log
elif [[ "$2" == mutator-lvl0 && "$3" == tdd ]]; then
echo "Running command:"
echo "./mutator-lvl0 -SysHeader=false -MainOnly=true ./test/testFuncs1.c ./test/testFuncs2.c ./test/testFuncs3.c -- -std=c90 -I/lib/gcc/x86_64-redhat-linux/6.3.1/include > ./test/misra-log"
"./mutator-lvl0" -SysHeader=false -MainOnly=true ./test/testFuncs1.c ./test/testFuncs2.c ./test/testFuncs3.c -- -std=c90 -I/lib/gcc/x86_64-redhat-linux/6.3.1/include > ./test/misra-log
elif [[ "$2" == mutator-lvl0 && "$3" == xsd ]]; then
echo "xmllint --noout --schema ./samples/mutator0-report-schema.xsd ./test/misrareport.xml"
"xmllint" --noout --schema ./samples/mutator0-report-schema.xsd ./test/misrareport.xml
elif [[ "$2" == precommit ]]; then
cd ./extra-tools
"./precommitTests.sh"
else
echo "unknown combination of options: $2 and $3"
exit 127
fi
exit 0
;;
-f|--file)
INPUT_FILE="$2"
while read -r line
do
case $line in
action_name:*)
F_ACTION_NAME=${line:12:$((${#line}))}
;;
executable_name:*)
F_EXEC_NAME=${line:16:$((${#line}))}
;;
exec_opts:*)
F_EXEC_COPTS=${line:10:$((${#line}))}
;;
in_files:*)
F_IN_FILES=${line:9:$((${#line}))}
;;
libtooling_options:*)
F_LIBTOOLING_OPTS=${line:19:$((${#line}))}
;;
out_files:*)
F_OUT_FILE=${line:10:$((${#line}))}
;;
log_files:*)
F_LOG_FILE=${line:10:$((${#line}))}
;;
\#*)
#ignore.its a comment.
;;
print_pretty:*)
F_PRINT_PRETTY=${line:13:$((${#line}))}
;;
end_action:*)
F_END_ACTION=${line:11:$((${#line}))}
if [[ "$F_END_ACTION" == run ]]; then
echo "running $F_ACTION_NAME ..."
echo "running ./$F_EXEC_NAME $F_EXEC_COPTS $F_IN_FILES -- $F_LIBTOOLING_OPTS > $F_OUT_FILE for $F_ACTION_NAME"
eval "./"$F_EXEC_NAME $F_EXEC_COPTS $F_IN_FILES -- $F_LIBTOOLING_OPTS > $F_OUT_FILE
if [[ "$F_PRINT_PRETTY" = true ]]; then
echo "running pretty print..."
source ./extra-tools/ReportPrintPretty.sh $F_OUT_FILE $F_OUT_FILE-pretty
fi
elif [[ "$F_END_ACTION" == stop ]]; then
#skip running ths action
echo "skipping $F_ACTION_NAME ..."
else
echo "unknown option $F_END_ACTION for end_action. currently the only acceptable options are \"run\" and \"stop\"."
fi
;;
esac
done < "$INPUT_FILE"
exit 0
shift
;;
-v|--version)
echo "mutator-lvl0 1.0.0 Pre-release"
echo "mutator 1.0.0. Demo"
exit 0
;;
-i|--input|-input)
while [[ ! "$2" == -* ]] && [[ $# -gt 0 ]]; do
INPUT="$INPUT"" ""$2"
shift
done
;;
-opts|--options)
OPTIONS="$2"
shift
;;
-copts|--customoptions)
COPTIONS="$2"
shift
;;
-o|--output|-output)
OUTPUT="$2"
shift
;;
*)
#not a valid argument
echo "$1 is not a valid argument..."
exit 127
;;
esac
shift
done
if [[ "$COMMAND" == "clean" ]]; then
echo "Running make clean..."
echo "Killing all mutants..."
"make" clean
rm ./test/"$OUTPUT"
rm ./test/misra-log
rm ./test/medium.c
rm ./test/mutant_format.c
rm ./test/mutant-lvl1.c
rm ./extra-tools/dump
elif [[ "$COMMAND" == "format" ]]; then
echo 'using clang-format to format the mutant...'
"/home/bloodstalker/llvm-clang/build/bin/clang-format" $OUTPUT > $OUTPUT_FORMAT
elif [[ "$COMMAND" == "test" ]]; then
echo "you haven't implemented it yet..."
elif [[ "$COMMAND" == "build-all" ]]; then
echo "Building all executables..."
"make" all
elif [[ "$COMMAND" == "run" ]];then
echo "Running executables on target file..."
"./mutator-lvl1" $INPUT -- > mutant-lvl1.c
"./mutator-lvl2" mutant-lvl1.c -- > $OUTPUT
elif [[ "$COMMAND" == "misrac" ]]; then
echo "Removing previous XML report..."
"rm" ./test/misrareport.xml
echo "Removing previous JSON report..."
"rm" ./test/misrareport.json
echo "checking input file(s) against Misra-C 2004..."
echo "Command to run:"
echo "./mutator-lvl0 ${COPTIONS:0:$((${#COPTIONS}))} $INPUT -- ${OPTIONS:0:$((${#OPTIONS}))} > ./test/misra-log"
"./mutator-lvl0" ${COPTIONS:0:$((${#COPTIONS}))} $INPUT -- ${OPTIONS:0:$((${#OPTIONS}))} > ./test/misra-log
if [[ "$PRINT_PRETTY" = true ]]; then
echo "running pretty print..."
source ./extra-tools/ReportPrintPretty.sh ./test/misra-log ./test/misra-log-pretty
fi
elif [[ "$COMMAND" == "default" ]]; then
echo "This option is deprecated..."
exit 0
echo "Building all target executables..."
"make" all CXX=clang++ BUILD_MODE=COV_NO_CLANG_1Z
echo "Ruunning the input through clang-format..."
"clang-format" $INPUT -- > ./test/$OUTPUT_FORMAT
"cp" ./test/$OUTPUT_FORMAT ./test/medium.c
echo "Running all exetubales on target input..."
echo "Level 1..."
"./mutator-lvl1" ./test/medium.c -- > ./test/mutant-lvl1.c
echo "Level 2..."
"./mutator-lvl2" ./test/mutant-lvl1.c -- > ./test/$OUTPUT
echo "Using clang-format to format the mutant..."
"clang-format" ./test/$OUTPUT -- > ./test/$OUTPUT_FORMAT
elif [[ "$COMMAND" == "auto-refac" ]]; then
echo "Warning! This option is not yet completely implemented."
echo "Copying input file(s) to temp..."
CP_INPUT_ARR=$(echo "$INPUT" | awk 'BEGIN{RS=" "}{print $1}')
echo $CP_INPUT_ARR
"cp" $CP_INPUT_ARR ./temp
echo "Running clang-format on the copies of input(s)..."
RUN_INPUT_ARR=$(ls ./temp | gawk 'BEGIN{RS="\n"}{print $1}')
for loopinput in ${RUN_INPUT_ARR[@]}; do
echo mut1-$loopinput
echo "Running automatic-refactoring on input mut1-$loopinput..."
"./mutator-lvl1" ./temp/$loopinput -- -w > ./temp/mut1-$loopinput
"clang-format" -i $loopinput
"./mutator-lvl2" ./temp/mut1-$loopinput -- -w > ./temp/mut2-$loopinput
"clang-format" -i ./temp/mut2-$loopinput
done
elif [[ "$COMMAND" == "jack" ]]; then
echo
else
echo "$COMMAND is not a valid command..."
echo "Use --help for a list of valid commands..."
exit 1
fi
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